JCDB: Jatropha curcas Database

• Gene
• Transcript
• Protein

JCDBG00014

ID

JCDBG00014

Name

atpI

Type

protein_coding

Scaffold

NC_012224.1

Start

16131

End

16874

Strand

-

Link

Genbank id:7564836 | Jatropha Genome Database ID:Jcr4U31230.10

Molecular function

GO:0015078 | hydrogen ion transmembrane transporter activity

Cellular component

Biological process

GO:0015986 | ATP synthesis coupled proton transport

KEGG

Entry: K02108
Name: ATPF0A, atpB
Definition: F-type H+-transporting ATPase subunit a
ko00190:   Oxidative phosphorylation
ko00195:   Photosynthesis

Source

RefSeq

TF

Description

Sequence

TATGAATGTTCTATCATGTTCCATAAACACACTAAAAGGGTTATATGATATATCCGGTGTGGAAGTAGGCCAGCATTTCT ATTGGAAAATAGGAGGTTTCCAAGTCCATGCCCAAGTACTTATTACTTCTTGGGTTGTAATTACTATCTTATTAGGTTCA GCCATTGTAGCTGTTCGGAATCCACAAACCATTCCGACTGGCGGGCAGAATTTCTTCGAATATGTCCTTGAATTCATTCG GGATGTGAGCAAAACTCAGATTGGAGAGGAATATGGCTCATGGGTCCCCTTTATTGGAACTATGTTTTTATTTATTTTTG TTTCTAATTGGGCTGGGGCGCTTTTGCCTTGGAAGATCATAGAGTTACCTCATGGGGAGTTAGCCGCACCTACGAATGAT ATAAATACTACCGTTGCTTTAGCTTTACTTACGTCAATAGCATATTTTTATGCGGGCCTTAGGAAAAAAGGATTAGGTTA TTTCAGCAAATACATTCAGCCAACTCCAATCCTTTTACCCATTAACATTTTAGAAGATTTCACAAAACCTTTATCACTTA GCTTTCGACTTTTCGGAAATATATTAGCGGACGAATTAGTAGTTGTTGTTCTTGTTTCTTTAGTACCTTCAGTGGTTCCT ATACCTGTCATGTTCCTTGGATTATTTACAAGCGGTATTCAAGCTCTTATTTTTGCAACTTTAGCCGCGGCTTATATAGG CGAATCCATGGAGGGGCATCATTG

Gene structure

JCDB Genes gff download

JCDBG00014 's gene expression heatmap with it's positive (above) and negative (bellow) co-expressed neighbours

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Sample information

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JCDBG00014's gene network (protein-protein interaction & gene co-expression among this gene and its Top10 neighbors)   

Node color:
Pumpkin: this gene;
Macaroni And Cheese : co-expression gene;
Forest Green :protein-interacting gene ;
Edge color:
Pelorous: co-expression;
Turquoise Blue HueBlue : protein protein interaction;

co-expression network

node1	node2	type	scc
JCDBG00014	JCDBG00015	co-exp	0.962428
JCDBG00014	JCDBG00076	co-exp	0.927644
JCDBG00014	JCDBG00074	co-exp	0.908064
JCDBG00014	JCDBG00042	co-exp	0.895739
JCDBG00014	JCDBG00043	co-exp	0.885746
JCDBG00014	JCDBG00016	co-exp	0.880861
JCDBG00014	JCDBG00029	co-exp	0.879308
JCDBG00014	JCDBG00013	co-exp	0.863631
JCDBG00014	JCDBG00066	co-exp	0.856988
JCDBG00014	JCDBG00073	co-exp	0.847308
JCDBG00015	JCDBG00076	co-exp	0.930852
JCDBG00015	JCDBG00074	co-exp	0.915663
JCDBG00015	JCDBG00042	co-exp	0.895991
JCDBG00015	JCDBG00043	co-exp	0.838211
JCDBG00015	JCDBG00016	co-exp	0.940419
JCDBG00015	JCDBG00029	co-exp	0.810684
JCDBG00015	JCDBG00013	co-exp	0.801903
JCDBG00015	JCDBG00066	co-exp	0.817076
JCDBG00015	JCDBG00073	co-exp	0.832888
JCDBG00076	JCDBG00074	co-exp	0.954077
JCDBG00076	JCDBG00042	co-exp	0.878569
JCDBG00076	JCDBG00043	co-exp	0.777139
JCDBG00076	JCDBG00016	co-exp	0.885852
JCDBG00076	JCDBG00029	co-exp	0.780435
JCDBG00076	JCDBG00013	co-exp	0.754789
JCDBG00076	JCDBG00066	co-exp	0.790643
JCDBG00076	JCDBG00073	co-exp	0.907254
JCDBG00074	JCDBG00042	co-exp	0.855675
JCDBG00074	JCDBG00043	co-exp	0.72181
JCDBG00074	JCDBG00016	co-exp	0.898756
JCDBG00074	JCDBG00029	co-exp	0.721363
JCDBG00074	JCDBG00013	co-exp	0.710655
JCDBG00074	JCDBG00066	co-exp	0.812118
JCDBG00074	JCDBG00073	co-exp	0.919097
JCDBG00042	JCDBG00043	co-exp	0.744324
JCDBG00042	JCDBG00016	co-exp	0.87673
JCDBG00042	JCDBG00029	co-exp	0.738498
JCDBG00042	JCDBG00013	co-exp	0.680279
JCDBG00042	JCDBG00066	co-exp	0.761356
JCDBG00042	JCDBG00073	co-exp	0.877775
JCDBG00043	JCDBG00016	co-exp	0.685365
JCDBG00043	JCDBG00029	co-exp	0.950823
JCDBG00043	JCDBG00013	co-exp	0.958265
JCDBG00043	JCDBG00066	co-exp	0.801506
JCDBG00043	JCDBG00073	co-exp	0.617755
JCDBG00016	JCDBG00029	co-exp	0.65824
JCDBG00016	JCDBG00013	co-exp	0.652062
JCDBG00016	JCDBG00066	co-exp	0.814743
JCDBG00016	JCDBG00073	co-exp	0.842042
JCDBG00029	JCDBG00013	co-exp	0.954387
JCDBG00029	JCDBG00066	co-exp	0.741453
JCDBG00029	JCDBG00073	co-exp	0.64327
JCDBG00013	JCDBG00066	co-exp	0.788828
JCDBG00066	JCDBG00073	co-exp	0.745586

PPI network

node1	node2	type