Detail information of JCDBG00014
JCDBG00014
- ID
- JCDBG00014
- Name
- atpI
- Type
- protein_coding
- Scaffold
- NC_012224.1
- Start
- 16131
- End
- 16874
- Strand
- -
- Link
- Genbank id:7564836 | Jatropha Genome Database ID:Jcr4U31230.10
- Molecular function
- GO:0015078 | hydrogen ion transmembrane transporter activity
- Cellular component
- Biological process
- GO:0015986 | ATP synthesis coupled proton transport
- KEGG
- Entry: K02108
Name: ATPF0A, atpBDefinition: F-type H+-transporting ATPase subunit a
ko00190: Oxidative phosphorylation
ko00195: Photosynthesis - Source
- RefSeq
- TF
- Description
- Sequence
- TATGAATGTTCTATCATGTTCCATAAACACACTAAAAGGGTTATATGATATATCCGGTGTGGAAGTAGGCCAGCATTTCT ATTGGAAAATAGGAGGTTTCCAAGTCCATGCCCAAGTACTTATTACTTCTTGGGTTGTAATTACTATCTTATTAGGTTCA GCCATTGTAGCTGTTCGGAATCCACAAACCATTCCGACTGGCGGGCAGAATTTCTTCGAATATGTCCTTGAATTCATTCG GGATGTGAGCAAAACTCAGATTGGAGAGGAATATGGCTCATGGGTCCCCTTTATTGGAACTATGTTTTTATTTATTTTTG TTTCTAATTGGGCTGGGGCGCTTTTGCCTTGGAAGATCATAGAGTTACCTCATGGGGAGTTAGCCGCACCTACGAATGAT ATAAATACTACCGTTGCTTTAGCTTTACTTACGTCAATAGCATATTTTTATGCGGGCCTTAGGAAAAAAGGATTAGGTTA TTTCAGCAAATACATTCAGCCAACTCCAATCCTTTTACCCATTAACATTTTAGAAGATTTCACAAAACCTTTATCACTTA GCTTTCGACTTTTCGGAAATATATTAGCGGACGAATTAGTAGTTGTTGTTCTTGTTTCTTTAGTACCTTCAGTGGTTCCT ATACCTGTCATGTTCCTTGGATTATTTACAAGCGGTATTCAAGCTCTTATTTTTGCAACTTTAGCCGCGGCTTATATAGG CGAATCCATGGAGGGGCATCATTG
- Gene structure
-
JCDB Genes gff download
JCDBG00014 's gene expression heatmap with it's positive (above) and negative (bellow) co-expressed neighboursMouse click the small gray square will display sample information.
JCDBG00014's gene network (protein-protein interaction & gene co-expression among this gene and its Top10 neighbors)   
Node color:
Pumpkin: this gene;
Macaroni And Cheese : co-expression gene;
Forest Green :protein-interacting gene ;
Edge color:
Pelorous: co-expression;
Turquoise Blue HueBlue : protein protein interaction;co-expression network
node1 node2 type scc JCDBG00014 JCDBG00015 co-exp 0.962428 JCDBG00014 JCDBG00076 co-exp 0.927644 JCDBG00014 JCDBG00074 co-exp 0.908064 JCDBG00014 JCDBG00042 co-exp 0.895739 JCDBG00014 JCDBG00043 co-exp 0.885746 JCDBG00014 JCDBG00016 co-exp 0.880861 JCDBG00014 JCDBG00029 co-exp 0.879308 JCDBG00014 JCDBG00013 co-exp 0.863631 JCDBG00014 JCDBG00066 co-exp 0.856988 JCDBG00014 JCDBG00073 co-exp 0.847308 JCDBG00015 JCDBG00076 co-exp 0.930852 JCDBG00015 JCDBG00074 co-exp 0.915663 JCDBG00015 JCDBG00042 co-exp 0.895991 JCDBG00015 JCDBG00043 co-exp 0.838211 JCDBG00015 JCDBG00016 co-exp 0.940419 JCDBG00015 JCDBG00029 co-exp 0.810684 JCDBG00015 JCDBG00013 co-exp 0.801903 JCDBG00015 JCDBG00066 co-exp 0.817076 JCDBG00015 JCDBG00073 co-exp 0.832888 JCDBG00076 JCDBG00074 co-exp 0.954077 JCDBG00076 JCDBG00042 co-exp 0.878569 JCDBG00076 JCDBG00043 co-exp 0.777139 JCDBG00076 JCDBG00016 co-exp 0.885852 JCDBG00076 JCDBG00029 co-exp 0.780435 JCDBG00076 JCDBG00013 co-exp 0.754789 JCDBG00076 JCDBG00066 co-exp 0.790643 JCDBG00076 JCDBG00073 co-exp 0.907254 JCDBG00074 JCDBG00042 co-exp 0.855675 JCDBG00074 JCDBG00043 co-exp 0.72181 JCDBG00074 JCDBG00016 co-exp 0.898756 JCDBG00074 JCDBG00029 co-exp 0.721363 JCDBG00074 JCDBG00013 co-exp 0.710655 JCDBG00074 JCDBG00066 co-exp 0.812118 JCDBG00074 JCDBG00073 co-exp 0.919097 JCDBG00042 JCDBG00043 co-exp 0.744324 JCDBG00042 JCDBG00016 co-exp 0.87673 JCDBG00042 JCDBG00029 co-exp 0.738498 JCDBG00042 JCDBG00013 co-exp 0.680279 JCDBG00042 JCDBG00066 co-exp 0.761356 JCDBG00042 JCDBG00073 co-exp 0.877775 JCDBG00043 JCDBG00016 co-exp 0.685365 JCDBG00043 JCDBG00029 co-exp 0.950823 JCDBG00043 JCDBG00013 co-exp 0.958265 JCDBG00043 JCDBG00066 co-exp 0.801506 JCDBG00043 JCDBG00073 co-exp 0.617755 JCDBG00016 JCDBG00029 co-exp 0.65824 JCDBG00016 JCDBG00013 co-exp 0.652062 JCDBG00016 JCDBG00066 co-exp 0.814743 JCDBG00016 JCDBG00073 co-exp 0.842042 JCDBG00029 JCDBG00013 co-exp 0.954387 JCDBG00029 JCDBG00066 co-exp 0.741453 JCDBG00029 JCDBG00073 co-exp 0.64327 JCDBG00013 JCDBG00066 co-exp 0.788828 JCDBG00066 JCDBG00073 co-exp 0.745586 PPI network
node1 node2 type
JCDBR00014
- ID
- JCDBR00014
- Name
- atpI
- Type
- protein_coding
- Scaffold
- NC_012224.1
- Start
- 16131
- End
- 16874
- Strand
- -
- Exon
- 16131-16874
- Sequence
- TATGAATGTTCTATCATGTTCCATAAACACACTAAAAGGGTTATATGATATATCCGGTGTGGAAGTAGGCCAGCATTTCT ATTGGAAAATAGGAGGTTTCCAAGTCCATGCCCAAGTACTTATTACTTCTTGGGTTGTAATTACTATCTTATTAGGTTCA GCCATTGTAGCTGTTCGGAATCCACAAACCATTCCGACTGGCGGGCAGAATTTCTTCGAATATGTCCTTGAATTCATTCG GGATGTGAGCAAAACTCAGATTGGAGAGGAATATGGCTCATGGGTCCCCTTTATTGGAACTATGTTTTTATTTATTTTTG TTTCTAATTGGGCTGGGGCGCTTTTGCCTTGGAAGATCATAGAGTTACCTCATGGGGAGTTAGCCGCACCTACGAATGAT ATAAATACTACCGTTGCTTTAGCTTTACTTACGTCAATAGCATATTTTTATGCGGGCCTTAGGAAAAAAGGATTAGGTTA TTTCAGCAAATACATTCAGCCAACTCCAATCCTTTTACCCATTAACATTTTAGAAGATTTCACAAAACCTTTATCACTTA GCTTTCGACTTTTCGGAAATATATTAGCGGACGAATTAGTAGTTGTTGTTCTTGTTTCTTTAGTACCTTCAGTGGTTCCT ATACCTGTCATGTTCCTTGGATTATTTACAAGCGGTATTCAAGCTCTTATTTTTGCAACTTTAGCCGCGGCTTATATAGG CGAATCCATGGAGGGGCATCATTG
- Product
- Source
- RefSeq
- Link:
JCDBP00008
- ID
- JCDBP00008
- Parent
- JCDBR00014
- Name
- YP_002720100.1
- Scaffold
- NC_012224.1
- CDS
- 16131-16874
- Strand:
- -
- Sequence
- MNVLSCSINTLKGLYDISGVEVGQHFYWKIGGFQVHAQVLITSWVVITILLGSAIVAVRNPQTIPTGGQNFFEYVLEFIR DVSKTQIGEEYGSWVPFIGTMFLFIFVSNWAGALLPWKIIELPHGELAAPTNDINTTVALALLTSIAYFYAGLRKKGLGY FSKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPSVVPIPVMFLGLFTSGIQALIFATLAAAYIG ESMEGHH
- Product
- ATP synthase CF0 A subunit
- Source
- RefSeq
- Link
- YP_002720100.1
- InterProScan
- IPR000568 ATPase, F0 complex, subunit A
IPR023011 ATPase, F0 complex, subunit A, active site - Pfam
- PF00119.16 ATP-synt_A Domain