JCDB: Jatropha curcas Database

• Gene
• Transcript
• Protein

JCDBG00012

ID

JCDBG00012

Name

atpF

Type

protein_coding

Scaffold

NC_012224.1

Start

12729

End

13966

Strand

-

Link

Genbank id:7564834

Molecular function

GO:0015078 | hydrogen ion transmembrane transporter activity

Cellular component

GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o)

Biological process

GO:0015986 | ATP synthesis coupled proton transport

KEGG

Entry: K02109
Name: ATPF0B, atpF
Definition: F-type H+-transporting ATPase subunit b
ko00190:   Oxidative phosphorylation
ko00195:   Photosynthesis

Source

RefSeq

TF

Description

Sequence

TATGAAAAACGTAACCGATTCTTTCGTTTCCTTGGGTCACTGGCCATCCGCCGGGAGTTTCGGGTTTAATACCGATATTT TAGCAACAAATCCAATAAATCTAAGTGTAGTCCTTGGTGTATTAATTTTTTTTGGAAAGGGGGTGTGTGCGAGTTGTTTA TTTCAAGAATAGGCTGGATTGACCCAGCTGCGCTTTTTTCGTTTTAACTAGGAAAGACAAGGTGCATGATCCTGCGAATT ACTTCTGAATAAATTAAGAAATCATCTTTAAGAACCATAGCAGTTCGTGATTCATGGGTAAATATACTTTGATTCTCTAT CAACCAATAACGTGGGACCATTAACATGGTTAAAGCTAAATTGTTTGAAGTCTAGACGCAGCAAGGTACTCTTTCTACTA CTATGGTTAATATAAAAATGAAATGGGTTCAAAATAAATGAAATAGTTTTCGGTATAGAACACTCATGTCGAAAAAAGGA TTTGAACCCCTTTTTTTTTAATGGGTATTTCGCCCATTCTTATTCAATGCTGAGTCGATAACCTATGCATTAAAGTAAAT TCTTTGGATTTGAATTTGAAGAAAAAAAAAAAAGAAACAACTTTACTGACAATTACTTGTTTGGTCAGAAGAGTCCTCCG AATATTCCGGTCTTGGATTAGTGATTAGTTTCAATATTTTTTTTTGGAATATGAATTATGAATAAAGAAGAGAGGATAGG CTCATTTCAGTCAAAAAAGATATGGGAATTTTCCCATAAGTAATTGAAAAAAAAATGGAGCGTGAGAGCCAAATGAATCG AAAGATTCATGTTTGGTTCGGGAAGGGATCATGGAAGTTTTGCAATGAATGGAAAGATAATCTACTTTCATTAAGTGATT TATTAGATAATCGAAAACAAAGGATTTTGGATACTATTCGAAATTCAGAAGAACTACGTGAGGGGGCCATTGAACGGCTG GAAAAAGCCCGGGCCCGCTTACGGAAAGTGGAAATAGAAGCAGATCAGTTTCGAATGAATGGATACTCTGAGATAGAACG AGAAAAATCGAATTTGATTAATTCAACTTCTAAGACTTTAGAACAATTAGAAAATTACAAAAACGAAACCATTCATTTTG AACAACAAAGAACGATTAATCAAGTCCGACAACGGGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTGAATAGT TCTTTGACCAACGAGTTACATTTACGTACCATCAATTA

Gene structure

JCDB Genes gff download

JCDBG00012 's gene expression heatmap with it's positive (above) and negative (bellow) co-expressed neighbours

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Sample information

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JCDBG00012's gene network (protein-protein interaction & gene co-expression among this gene and its Top10 neighbors)   

Node color:
Pumpkin: this gene;
Macaroni And Cheese : co-expression gene;
Forest Green :protein-interacting gene ;
Edge color:
Pelorous: co-expression;
Turquoise Blue HueBlue : protein protein interaction;

co-expression network

node1	node2	type	scc
JCDBG00012	JCDBG00037	co-exp	0.963833
JCDBG00012	JCDBG00112	co-exp	0.961499
JCDBG00012	JCDBG00046	co-exp	0.949104
JCDBG00012	JCDBG00065	co-exp	0.946607
JCDBG00012	JCDBG00063	co-exp	0.938615
JCDBG00012	JCDBG00032	co-exp	0.935341
JCDBG00012	JCDBG11239	co-exp	0.912939
JCDBG00012	JCDBG00075	co-exp	0.912519
JCDBG00012	JCDBG00070	co-exp	0.911621
JCDBG00012	JCDBG00062	co-exp	0.910668
JCDBG00037	JCDBG00112	co-exp	0.958141
JCDBG00037	JCDBG00046	co-exp	0.956923
JCDBG00037	JCDBG00065	co-exp	0.962165
JCDBG00037	JCDBG00063	co-exp	0.966339
JCDBG00037	JCDBG00032	co-exp	0.917854
JCDBG00037	JCDBG11239	co-exp	0.943379
JCDBG00037	JCDBG00075	co-exp	0.939222
JCDBG00037	JCDBG00070	co-exp	0.943138
JCDBG00037	JCDBG00062	co-exp	0.934869
JCDBG00112	JCDBG00046	co-exp	0.924872
JCDBG00112	JCDBG00065	co-exp	0.944148
JCDBG00112	JCDBG00063	co-exp	0.929563
JCDBG00112	JCDBG00032	co-exp	0.894441
JCDBG00112	JCDBG11239	co-exp	0.919971
JCDBG00112	JCDBG00075	co-exp	0.92744
JCDBG00112	JCDBG00070	co-exp	0.886046
JCDBG00112	JCDBG00062	co-exp	0.902815
JCDBG00046	JCDBG00065	co-exp	0.954196
JCDBG00046	JCDBG00063	co-exp	0.932346
JCDBG00046	JCDBG00032	co-exp	0.945749
JCDBG00046	JCDBG11239	co-exp	0.899265
JCDBG00046	JCDBG00075	co-exp	0.886163
JCDBG00046	JCDBG00070	co-exp	0.918786
JCDBG00046	JCDBG00062	co-exp	0.908979
JCDBG00065	JCDBG00063	co-exp	0.942622
JCDBG00065	JCDBG00032	co-exp	0.899738
JCDBG00065	JCDBG11239	co-exp	0.91345
JCDBG00065	JCDBG00075	co-exp	0.920844
JCDBG00065	JCDBG00070	co-exp	0.908277
JCDBG00065	JCDBG00062	co-exp	0.946062
JCDBG00063	JCDBG00032	co-exp	0.894993
JCDBG00063	JCDBG11239	co-exp	0.950032
JCDBG00063	JCDBG00075	co-exp	0.953019
JCDBG00063	JCDBG00070	co-exp	0.952478
JCDBG00063	JCDBG00062	co-exp	0.914786
JCDBG00032	JCDBG11239	co-exp	0.833857
JCDBG00032	JCDBG00075	co-exp	0.821295
JCDBG00032	JCDBG00070	co-exp	0.913395
JCDBG00032	JCDBG00062	co-exp	0.87634
JCDBG11239	JCDBG00075	co-exp	0.952265
JCDBG11239	JCDBG00070	co-exp	0.898642
JCDBG11239	JCDBG00062	co-exp	0.888295
JCDBG00075	JCDBG00070	co-exp	0.901847
JCDBG00075	JCDBG00062	co-exp	0.905767
JCDBG00070	JCDBG00062	co-exp	0.90613

PPI network

node1	node2	type