Detail information of JCDBG00012
JCDBG00012
- ID
- JCDBG00012
- Name
- atpF
- Type
- protein_coding
- Scaffold
- NC_012224.1
- Start
- 12729
- End
- 13966
- Strand
- -
- Link
- Genbank id:7564834
- Molecular function
- GO:0015078 | hydrogen ion transmembrane transporter activity
- Cellular component
- GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o)
- Biological process
- GO:0015986 | ATP synthesis coupled proton transport
- KEGG
- Entry: K02109
Name: ATPF0B, atpFDefinition: F-type H+-transporting ATPase subunit b
ko00190: Oxidative phosphorylation
ko00195: Photosynthesis - Source
- RefSeq
- TF
- Description
- Sequence
- TATGAAAAACGTAACCGATTCTTTCGTTTCCTTGGGTCACTGGCCATCCGCCGGGAGTTTCGGGTTTAATACCGATATTT TAGCAACAAATCCAATAAATCTAAGTGTAGTCCTTGGTGTATTAATTTTTTTTGGAAAGGGGGTGTGTGCGAGTTGTTTA TTTCAAGAATAGGCTGGATTGACCCAGCTGCGCTTTTTTCGTTTTAACTAGGAAAGACAAGGTGCATGATCCTGCGAATT ACTTCTGAATAAATTAAGAAATCATCTTTAAGAACCATAGCAGTTCGTGATTCATGGGTAAATATACTTTGATTCTCTAT CAACCAATAACGTGGGACCATTAACATGGTTAAAGCTAAATTGTTTGAAGTCTAGACGCAGCAAGGTACTCTTTCTACTA CTATGGTTAATATAAAAATGAAATGGGTTCAAAATAAATGAAATAGTTTTCGGTATAGAACACTCATGTCGAAAAAAGGA TTTGAACCCCTTTTTTTTTAATGGGTATTTCGCCCATTCTTATTCAATGCTGAGTCGATAACCTATGCATTAAAGTAAAT TCTTTGGATTTGAATTTGAAGAAAAAAAAAAAAGAAACAACTTTACTGACAATTACTTGTTTGGTCAGAAGAGTCCTCCG AATATTCCGGTCTTGGATTAGTGATTAGTTTCAATATTTTTTTTTGGAATATGAATTATGAATAAAGAAGAGAGGATAGG CTCATTTCAGTCAAAAAAGATATGGGAATTTTCCCATAAGTAATTGAAAAAAAAATGGAGCGTGAGAGCCAAATGAATCG AAAGATTCATGTTTGGTTCGGGAAGGGATCATGGAAGTTTTGCAATGAATGGAAAGATAATCTACTTTCATTAAGTGATT TATTAGATAATCGAAAACAAAGGATTTTGGATACTATTCGAAATTCAGAAGAACTACGTGAGGGGGCCATTGAACGGCTG GAAAAAGCCCGGGCCCGCTTACGGAAAGTGGAAATAGAAGCAGATCAGTTTCGAATGAATGGATACTCTGAGATAGAACG AGAAAAATCGAATTTGATTAATTCAACTTCTAAGACTTTAGAACAATTAGAAAATTACAAAAACGAAACCATTCATTTTG AACAACAAAGAACGATTAATCAAGTCCGACAACGGGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTGAATAGT TCTTTGACCAACGAGTTACATTTACGTACCATCAATTA
- Gene structure
-
JCDB Genes gff download
JCDBG00012 's gene expression heatmap with it's positive (above) and negative (bellow) co-expressed neighboursMouse click the small gray square will display sample information.
JCDBG00012's gene network (protein-protein interaction & gene co-expression among this gene and its Top10 neighbors)   
Node color:
Pumpkin: this gene;
Macaroni And Cheese : co-expression gene;
Forest Green :protein-interacting gene ;
Edge color:
Pelorous: co-expression;
Turquoise Blue HueBlue : protein protein interaction;co-expression network
node1 node2 type scc JCDBG00012 JCDBG00037 co-exp 0.963833 JCDBG00012 JCDBG00112 co-exp 0.961499 JCDBG00012 JCDBG00046 co-exp 0.949104 JCDBG00012 JCDBG00065 co-exp 0.946607 JCDBG00012 JCDBG00063 co-exp 0.938615 JCDBG00012 JCDBG00032 co-exp 0.935341 JCDBG00012 JCDBG11239 co-exp 0.912939 JCDBG00012 JCDBG00075 co-exp 0.912519 JCDBG00012 JCDBG00070 co-exp 0.911621 JCDBG00012 JCDBG00062 co-exp 0.910668 JCDBG00037 JCDBG00112 co-exp 0.958141 JCDBG00037 JCDBG00046 co-exp 0.956923 JCDBG00037 JCDBG00065 co-exp 0.962165 JCDBG00037 JCDBG00063 co-exp 0.966339 JCDBG00037 JCDBG00032 co-exp 0.917854 JCDBG00037 JCDBG11239 co-exp 0.943379 JCDBG00037 JCDBG00075 co-exp 0.939222 JCDBG00037 JCDBG00070 co-exp 0.943138 JCDBG00037 JCDBG00062 co-exp 0.934869 JCDBG00112 JCDBG00046 co-exp 0.924872 JCDBG00112 JCDBG00065 co-exp 0.944148 JCDBG00112 JCDBG00063 co-exp 0.929563 JCDBG00112 JCDBG00032 co-exp 0.894441 JCDBG00112 JCDBG11239 co-exp 0.919971 JCDBG00112 JCDBG00075 co-exp 0.92744 JCDBG00112 JCDBG00070 co-exp 0.886046 JCDBG00112 JCDBG00062 co-exp 0.902815 JCDBG00046 JCDBG00065 co-exp 0.954196 JCDBG00046 JCDBG00063 co-exp 0.932346 JCDBG00046 JCDBG00032 co-exp 0.945749 JCDBG00046 JCDBG11239 co-exp 0.899265 JCDBG00046 JCDBG00075 co-exp 0.886163 JCDBG00046 JCDBG00070 co-exp 0.918786 JCDBG00046 JCDBG00062 co-exp 0.908979 JCDBG00065 JCDBG00063 co-exp 0.942622 JCDBG00065 JCDBG00032 co-exp 0.899738 JCDBG00065 JCDBG11239 co-exp 0.91345 JCDBG00065 JCDBG00075 co-exp 0.920844 JCDBG00065 JCDBG00070 co-exp 0.908277 JCDBG00065 JCDBG00062 co-exp 0.946062 JCDBG00063 JCDBG00032 co-exp 0.894993 JCDBG00063 JCDBG11239 co-exp 0.950032 JCDBG00063 JCDBG00075 co-exp 0.953019 JCDBG00063 JCDBG00070 co-exp 0.952478 JCDBG00063 JCDBG00062 co-exp 0.914786 JCDBG00032 JCDBG11239 co-exp 0.833857 JCDBG00032 JCDBG00075 co-exp 0.821295 JCDBG00032 JCDBG00070 co-exp 0.913395 JCDBG00032 JCDBG00062 co-exp 0.87634 JCDBG11239 JCDBG00075 co-exp 0.952265 JCDBG11239 JCDBG00070 co-exp 0.898642 JCDBG11239 JCDBG00062 co-exp 0.888295 JCDBG00075 JCDBG00070 co-exp 0.901847 JCDBG00075 JCDBG00062 co-exp 0.905767 JCDBG00070 JCDBG00062 co-exp 0.90613 PPI network
node1 node2 type
JCDBR00012
- ID
- JCDBR00012
- Name
- atpF
- Type
- protein_coding
- Scaffold
- NC_012224.1
- Start
- 12729
- End
- 13966
- Strand
- -
- Exon
- 12729-13082,13808-13966
- Sequence
- TATGAAAAACGTAACCGATTCTTTCGTTTCCTTGGGTCACTGGCCATCCGCCGGGAGTTTCGGGTTTAATACCGATATTT TAGCAACAAATCCAATAAATCTAAGTGTAGTCCTTGGTGTATTAATTTTTTTTGGAAAGGGGGTGTGTGCGAGTTGTTTA TTTCAAGAATAGGCTGGATTGACCCAGCTGCGCTTTTTTCGTTTTAACTAGGAAAGACAAGGTGCATGATCCTGCGAATT ACTTCTGAATAAATTAAGAAATCATCTTTAAGAACCATAGCAGTTCGTGATTCATGGGTAAATATACTTTGATTCTCTAT CAACCAATAACGTGGGACCATTAACATGGTTAAAGCTAAATTGTTTGAAGTCTAGACGCAGCAAGGTACTCTTTCTACTA CTATGGTTAATATAAAAATGAAATGGGTTCAAAATAAATGAAATAGTTTTCGGTATAGAACACTCATGTCGAAAAAAGGA TTTGAACCCCTTTTTTTTTAATGGGTATTTCGCCCATTCTTATTCAATGCTGAGTCGATAACCTATGCATTAAAGTAAAT TCTTTGGATTTGAATTTGAAGAAAAAAAAAAAAGAAACAACTTTACTGACAATTACTTGTTTGGTCAGAAGAGTCCTCCG AATATTCCGGTCTTGGATTAGTGATTAGTTTCAATATTTTTTTTTGGAATATGAATTATGAATAAAGAAGAGAGGATAGG CTCATTTCAGTCAAAAAAGATATGGGAATTTTCCCATAAGTAATTGAAAAAAAAATGGAGCGTGAGAGCCAAATGAATCG AAAGATTCATGTTTGGTTCGGGAAGGGATCATGGAAGTTTTGCAATGAATGGAAAGATAATCTACTTTCATTAAGTGATT TATTAGATAATCGAAAACAAAGGATTTTGGATACTATTCGAAATTCAGAAGAACTACGTGAGGGGGCCATTGAACGGCTG GAAAAAGCCCGGGCCCGCTTACGGAAAGTGGAAATAGAAGCAGATCAGTTTCGAATGAATGGATACTCTGAGATAGAACG AGAAAAATCGAATTTGATTAATTCAACTTCTAAGACTTTAGAACAATTAGAAAATTACAAAAACGAAACCATTCATTTTG AACAACAAAGAACGATTAATCAAGTCCGACAACGGGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTGAATAGT TCTTTGACCAACGAGTTACATTTACGTACCATCAATTA
- Product
- Source
- RefSeq
- Link:
JCDBP00006
- ID
- JCDBP00006
- Parent
- JCDBR00012
- Name
- YP_002720098.1
- Scaffold
- NC_012224.1
- CDS
- 12729-13082,13808-13966
- Strand:
- -
- Sequence
- MKNVTDSFVSLGHWPSAGSFGFNTDILATNPINLSVVLGVLIFFGKGVCASCLDNRKQRILDTIRNSEELREGAIERLEK ARARLRKVEIEADQFRMNGYSEIEREKSNLINSTSKTLEQLENYKNETIHFEQQRTINQVRQRVFQQALQGALGTLNSSL TNELHLRTIN
- Product
- ATP synthase CF0 B subunit
- Source
- RefSeq
- Link
- YP_002720098.1
- InterProScan
- IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast
- Pfam
- PF00430.14 ATP-synt_B Family