JCDB: Jatropha curcas Database

• Gene
• Transcript

JCDBG00003

ID

JCDBG00003

Name

trnK-UUU

Type

tRNA

Scaffold

NC_012224.1

Start

1841

End

4606

Strand

-

Link

Genbank id:7636413

Molecular function

Cellular component

Biological process

KEGG

Source

RefSeq

TF

Description

Sequence

GGGGGGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAAGTGCGGCTAACTTCTTTTACACGTTTGTATGAAGAAAGG GATTCGTCCATACCGTCGGTATAGTTTGTAAGACCACGACTGATCCTGAAAGGAATGAATGGAAAAAACAGCATGTCGTA TCAATGGAGAATTCTGCGAATATTTCATTTTTGCCGGATCGGTCCAACCTTATTTGAATTCTTGATTTGATGCGGAACAT AAAAAAATGAATTCAAAGTTCGGTCGAGTTAATAAATGGATAGAGTCCTACGATTCCAATTATAGGGAAACAAAAAAGCA ACGAGCTTACGTTCTTAATTTGAACGATTATCCGATCTAATTAGACGTTAAAAATAAATTAGTACCTAATGCGGGAAAGG TTTCTCTATAAGCAGATTTTCTATTTTCTTTTAATGAGTCCTAACTATTAGCTATTCTCCACTATGAAGGGGAGACGAAT GTGTAGAAGAAAGAGTATATTGATAAAGAGATTTTTTCCAAAATCAAAAGAGCGATTGACTTGAAAAAATAAAGGATTTC TAATCATCTTTTTATCCTATCCTATAATGCACATAAACAAATTAGATGGAAAAAAGAAGAGGGTGGGGAGCCCGTTAATG ATAATGAGTTTATCTATTTCCGAGGTATCTACTCTTTGCTTATTATACTACATTTGTTTTTACTGTATCGCACTATGTAT CATTCACTATGTATCATTTTATAACCAACTCAATAAAAATCCTCTATCCTTGCTTCAATCAAATCTAATACATGTGGAAA TATCAAAGATATTTAGAACTAGATGGATCTCGAAAAAATGACCTCCTATACCCATTTATCTTTCGGGAGTATATTTATAT ATTTGCTCATGATCATAGTTTAAATAGATCGATTTTGTTGGAAAATGTAGGTTATGACAATAAATCTAGTTTCTTAATTG TAAAACGTTTAATTACTCGAATGTATCAACAGAATCGTTTGGTTTTTTTTTCTTTTTCTGCTAATGATTCTAACCAAAAT TCATTTTTTAAGTACAACAAGAATTTGTATTATCAAATGATATCAGAGAGCTTTGCAGTTATTGTGGAAATTCCATTTTC TCTACGGTTAGTATCTTCTTTAGAAAGGTCGGAGATAGTTAAATCTCATAAATTACGATCAATTCATTCAATATTTCCTT TTTTAGAGGACAAATTTCCACATTTAATTTATGTGTCAGATGTATTAATACCTTACCCCATCCATATAGAAAAATTAGTC CAAACCCTTCGCTATTGGATGAAAGATCCCTCTTCTTTGCATTTATTACGACTCTTTCTTCATGAATATTGGAATAGGAA CAGTCTTATTATTCAAAAGGGATCTATTTCTATTTTTACAAAAAGTAATCCAAGATTTTTCTTGTTCCTATATAATTCTC ATGTATATGAATACGAATCAATCCTCTTTTTTCTTCGTAACCAATCCTTTCATTTACGATCAACATTTTCTCGAGTCCTT CTTGAACGAATTTATTTCTATGGAAAAATAGAACATTTTGCAGAAGTCTTTGCTAATGATTTTCAGACTATCCTATGGTT GGTCAAGTATCCTTTCATGCATTATGTTAGATATCAAGGAAAATCCATTCTGGCTTCAAAAGATGGGCCTCTTCTGATGA AAAAATGGAAATATTACCTTGTCAATTTATGTCAATGTCATTTTTATGTGTGGTTTCAACCAGAAAAGATCTATATAAAT TCATTATCCAAGCATTCTCTCAACCTTTTGGGCTATCTTTCAAATGTAAAATTAAATCCTTCGGTCGTACGAAGTCAAAT GCTAGAAAATTCATTTCTAATAGATAAAGATAATACTATGAAGAAACTCGATACAATAGTTCCAATTATTCCTTTGATTG GATCATTGTCAAAAACGAAATTTTGTAAGGCAGTAGGACATCCCATTAGTAAACCGGTCCGGACTGATTCATCGGATTCT GATATTATCGACCGATTTGTGTGTATATGCAGAAATCTTTCTCATTATTATAGTGGATCTTCAATAAAAAAGAGTTTGTA TCGAGTAAAATATATACTTCGACTTTCTTGTGTTAAAACTTTGATTCGTAAACACAAAAGTACTGTACGCGCTTTTTTGA AAAGATTGGGTTCGGAATTATTAGAAGAATTTTTTACAGAAGAAGAACAAACTCTTTCTTTGATCTTCCCGAGAGTTTCC TCTATTTCGCGCAGGTTATATAGGGGGCGGGTTTGGTATTTGGATATTATTTCTATCAATGATTTGGCCAATCATGAATA ATTGGTTATGAAATCGAAATTTTCTCTAAATAACTAAAAAATAAATAATATAATGATAATGAGATATATAATATAATGAA ATATATAATAAGAAATATTATATAAAGAAATATTATATAATTAATAAGAAATATTATATATTTATTATATATTAAAAAAT ATAATGAAATAGAATGAAGGGATAACAAAAAATTCATTCAGTTCTATTATGAATATGAAATATGAAATGCTCATACAGTA TACGAGTAAGGATTGAGCAACTGAGTATTCAACTTCCTTATAGGTTTCGTCTAGGAAGGGAACTGGGTTTTAGATGTATA CATAGGGAAAGCCGTGTGCAATGAAAACGCAAGCACGGCTTGGAGAGGGATTTTTTACCTATTTTTTAACAAGGAAAATT TCTACTCTATCCGACTAGTTCCGGGTTCGAGTCCCGGGTAACCCAT

Gene structure

JCDB Genes gff download

JCDBG00003 's gene expression heatmap with it's positive (above) and negative (bellow) co-expressed neighbours

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Sample information

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JCDBG00003's gene network (protein-protein interaction & gene co-expression among this gene and its Top10 neighbors)   

Node color:
Pumpkin: this gene;
Macaroni And Cheese : co-expression gene;
Forest Green :protein-interacting gene ;
Edge color:
Pelorous: co-expression;
Turquoise Blue HueBlue : protein protein interaction;

co-expression network

node1	node2	type	scc
JCDBG00003	JCDBG25274	co-exp	0.898339
JCDBG00003	JCDBG00989	co-exp	0.823533
JCDBG00003	JCDBG00044	co-exp	0.808955
JCDBG00003	JCDBG24818	co-exp	0.736289
JCDBG00003	JCDBG00851	co-exp	0.713392
JCDBG00003	JCDBG18679	co-exp	0.671498
JCDBG00003	JCDBG00039	co-exp	0.663478
JCDBG00003	JCDBG04201	co-exp	0.655206
JCDBG25274	JCDBG00989	co-exp	0.736685
JCDBG25274	JCDBG00044	co-exp	0.72347
JCDBG25274	JCDBG24818	co-exp	0.659395
JCDBG25274	JCDBG00851	co-exp	0.635247
JCDBG00989	JCDBG00044	co-exp	0.660031
JCDBG00989	JCDBG24818	co-exp	0.610394
JCDBG00989	JCDBG04201	co-exp	0.716892
JCDBG00044	JCDBG18679	co-exp	0.736685
JCDBG00044	JCDBG00039	co-exp	0.91683
JCDBG24818	JCDBG04201	co-exp	0.663513
JCDBG00851	JCDBG18679	co-exp	0.623803
JCDBG00851	JCDBG00039	co-exp	0.629475
JCDBG18679	JCDBG00039	co-exp	0.804922

PPI network

node1	node2	type