Detail information of JCDBG00003
JCDBG00003
- ID
- JCDBG00003
- Name
- trnK-UUU
- Type
- tRNA
- Scaffold
- NC_012224.1
- Start
- 1841
- End
- 4606
- Strand
- -
- Link
- Genbank id:7636413
- Molecular function
- Cellular component
- Biological process
- KEGG
- Source
- RefSeq
- TF
- Description
- Sequence
- GGGGGGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAAGTGCGGCTAACTTCTTTTACACGTTTGTATGAAGAAAGG GATTCGTCCATACCGTCGGTATAGTTTGTAAGACCACGACTGATCCTGAAAGGAATGAATGGAAAAAACAGCATGTCGTA TCAATGGAGAATTCTGCGAATATTTCATTTTTGCCGGATCGGTCCAACCTTATTTGAATTCTTGATTTGATGCGGAACAT AAAAAAATGAATTCAAAGTTCGGTCGAGTTAATAAATGGATAGAGTCCTACGATTCCAATTATAGGGAAACAAAAAAGCA ACGAGCTTACGTTCTTAATTTGAACGATTATCCGATCTAATTAGACGTTAAAAATAAATTAGTACCTAATGCGGGAAAGG TTTCTCTATAAGCAGATTTTCTATTTTCTTTTAATGAGTCCTAACTATTAGCTATTCTCCACTATGAAGGGGAGACGAAT GTGTAGAAGAAAGAGTATATTGATAAAGAGATTTTTTCCAAAATCAAAAGAGCGATTGACTTGAAAAAATAAAGGATTTC TAATCATCTTTTTATCCTATCCTATAATGCACATAAACAAATTAGATGGAAAAAAGAAGAGGGTGGGGAGCCCGTTAATG ATAATGAGTTTATCTATTTCCGAGGTATCTACTCTTTGCTTATTATACTACATTTGTTTTTACTGTATCGCACTATGTAT CATTCACTATGTATCATTTTATAACCAACTCAATAAAAATCCTCTATCCTTGCTTCAATCAAATCTAATACATGTGGAAA TATCAAAGATATTTAGAACTAGATGGATCTCGAAAAAATGACCTCCTATACCCATTTATCTTTCGGGAGTATATTTATAT ATTTGCTCATGATCATAGTTTAAATAGATCGATTTTGTTGGAAAATGTAGGTTATGACAATAAATCTAGTTTCTTAATTG TAAAACGTTTAATTACTCGAATGTATCAACAGAATCGTTTGGTTTTTTTTTCTTTTTCTGCTAATGATTCTAACCAAAAT TCATTTTTTAAGTACAACAAGAATTTGTATTATCAAATGATATCAGAGAGCTTTGCAGTTATTGTGGAAATTCCATTTTC TCTACGGTTAGTATCTTCTTTAGAAAGGTCGGAGATAGTTAAATCTCATAAATTACGATCAATTCATTCAATATTTCCTT TTTTAGAGGACAAATTTCCACATTTAATTTATGTGTCAGATGTATTAATACCTTACCCCATCCATATAGAAAAATTAGTC CAAACCCTTCGCTATTGGATGAAAGATCCCTCTTCTTTGCATTTATTACGACTCTTTCTTCATGAATATTGGAATAGGAA CAGTCTTATTATTCAAAAGGGATCTATTTCTATTTTTACAAAAAGTAATCCAAGATTTTTCTTGTTCCTATATAATTCTC ATGTATATGAATACGAATCAATCCTCTTTTTTCTTCGTAACCAATCCTTTCATTTACGATCAACATTTTCTCGAGTCCTT CTTGAACGAATTTATTTCTATGGAAAAATAGAACATTTTGCAGAAGTCTTTGCTAATGATTTTCAGACTATCCTATGGTT GGTCAAGTATCCTTTCATGCATTATGTTAGATATCAAGGAAAATCCATTCTGGCTTCAAAAGATGGGCCTCTTCTGATGA AAAAATGGAAATATTACCTTGTCAATTTATGTCAATGTCATTTTTATGTGTGGTTTCAACCAGAAAAGATCTATATAAAT TCATTATCCAAGCATTCTCTCAACCTTTTGGGCTATCTTTCAAATGTAAAATTAAATCCTTCGGTCGTACGAAGTCAAAT GCTAGAAAATTCATTTCTAATAGATAAAGATAATACTATGAAGAAACTCGATACAATAGTTCCAATTATTCCTTTGATTG GATCATTGTCAAAAACGAAATTTTGTAAGGCAGTAGGACATCCCATTAGTAAACCGGTCCGGACTGATTCATCGGATTCT GATATTATCGACCGATTTGTGTGTATATGCAGAAATCTTTCTCATTATTATAGTGGATCTTCAATAAAAAAGAGTTTGTA TCGAGTAAAATATATACTTCGACTTTCTTGTGTTAAAACTTTGATTCGTAAACACAAAAGTACTGTACGCGCTTTTTTGA AAAGATTGGGTTCGGAATTATTAGAAGAATTTTTTACAGAAGAAGAACAAACTCTTTCTTTGATCTTCCCGAGAGTTTCC TCTATTTCGCGCAGGTTATATAGGGGGCGGGTTTGGTATTTGGATATTATTTCTATCAATGATTTGGCCAATCATGAATA ATTGGTTATGAAATCGAAATTTTCTCTAAATAACTAAAAAATAAATAATATAATGATAATGAGATATATAATATAATGAA ATATATAATAAGAAATATTATATAAAGAAATATTATATAATTAATAAGAAATATTATATATTTATTATATATTAAAAAAT ATAATGAAATAGAATGAAGGGATAACAAAAAATTCATTCAGTTCTATTATGAATATGAAATATGAAATGCTCATACAGTA TACGAGTAAGGATTGAGCAACTGAGTATTCAACTTCCTTATAGGTTTCGTCTAGGAAGGGAACTGGGTTTTAGATGTATA CATAGGGAAAGCCGTGTGCAATGAAAACGCAAGCACGGCTTGGAGAGGGATTTTTTACCTATTTTTTAACAAGGAAAATT TCTACTCTATCCGACTAGTTCCGGGTTCGAGTCCCGGGTAACCCAT
- Gene structure
-
JCDB Genes gff download
JCDBG00003 's gene expression heatmap with it's positive (above) and negative (bellow) co-expressed neighboursMouse click the small gray square will display sample information.
JCDBG00003's gene network (protein-protein interaction & gene co-expression among this gene and its Top10 neighbors)   
Node color:
Pumpkin: this gene;
Macaroni And Cheese : co-expression gene;
Forest Green :protein-interacting gene ;
Edge color:
Pelorous: co-expression;
Turquoise Blue HueBlue : protein protein interaction;co-expression network
node1 node2 type scc JCDBG00003 JCDBG25274 co-exp 0.898339 JCDBG00003 JCDBG00989 co-exp 0.823533 JCDBG00003 JCDBG00044 co-exp 0.808955 JCDBG00003 JCDBG24818 co-exp 0.736289 JCDBG00003 JCDBG00851 co-exp 0.713392 JCDBG00003 JCDBG18679 co-exp 0.671498 JCDBG00003 JCDBG00039 co-exp 0.663478 JCDBG00003 JCDBG04201 co-exp 0.655206 JCDBG25274 JCDBG00989 co-exp 0.736685 JCDBG25274 JCDBG00044 co-exp 0.72347 JCDBG25274 JCDBG24818 co-exp 0.659395 JCDBG25274 JCDBG00851 co-exp 0.635247 JCDBG00989 JCDBG00044 co-exp 0.660031 JCDBG00989 JCDBG24818 co-exp 0.610394 JCDBG00989 JCDBG04201 co-exp 0.716892 JCDBG00044 JCDBG18679 co-exp 0.736685 JCDBG00044 JCDBG00039 co-exp 0.91683 JCDBG24818 JCDBG04201 co-exp 0.663513 JCDBG00851 JCDBG18679 co-exp 0.623803 JCDBG00851 JCDBG00039 co-exp 0.629475 JCDBG18679 JCDBG00039 co-exp 0.804922 PPI network
node1 node2 type
JCDBR00003
- ID
- JCDBR00003
- Name
- JCDBR00003
- Type
- Scaffold
- NC_012224.1
- Start
- 1841
- End
- 4606
- Strand
- -
- Exon
- 1841-1877,4567-4606
- Sequence
- GGGGGGGTTGCTAACTCAACGGTAGAGTACTCGGCTTTTAAGTGCGGCTAACTTCTTTTACACGTTTGTATGAAGAAAGG GATTCGTCCATACCGTCGGTATAGTTTGTAAGACCACGACTGATCCTGAAAGGAATGAATGGAAAAAACAGCATGTCGTA TCAATGGAGAATTCTGCGAATATTTCATTTTTGCCGGATCGGTCCAACCTTATTTGAATTCTTGATTTGATGCGGAACAT AAAAAAATGAATTCAAAGTTCGGTCGAGTTAATAAATGGATAGAGTCCTACGATTCCAATTATAGGGAAACAAAAAAGCA ACGAGCTTACGTTCTTAATTTGAACGATTATCCGATCTAATTAGACGTTAAAAATAAATTAGTACCTAATGCGGGAAAGG TTTCTCTATAAGCAGATTTTCTATTTTCTTTTAATGAGTCCTAACTATTAGCTATTCTCCACTATGAAGGGGAGACGAAT GTGTAGAAGAAAGAGTATATTGATAAAGAGATTTTTTCCAAAATCAAAAGAGCGATTGACTTGAAAAAATAAAGGATTTC TAATCATCTTTTTATCCTATCCTATAATGCACATAAACAAATTAGATGGAAAAAAGAAGAGGGTGGGGAGCCCGTTAATG ATAATGAGTTTATCTATTTCCGAGGTATCTACTCTTTGCTTATTATACTACATTTGTTTTTACTGTATCGCACTATGTAT CATTCACTATGTATCATTTTATAACCAACTCAATAAAAATCCTCTATCCTTGCTTCAATCAAATCTAATACATGTGGAAA TATCAAAGATATTTAGAACTAGATGGATCTCGAAAAAATGACCTCCTATACCCATTTATCTTTCGGGAGTATATTTATAT ATTTGCTCATGATCATAGTTTAAATAGATCGATTTTGTTGGAAAATGTAGGTTATGACAATAAATCTAGTTTCTTAATTG TAAAACGTTTAATTACTCGAATGTATCAACAGAATCGTTTGGTTTTTTTTTCTTTTTCTGCTAATGATTCTAACCAAAAT TCATTTTTTAAGTACAACAAGAATTTGTATTATCAAATGATATCAGAGAGCTTTGCAGTTATTGTGGAAATTCCATTTTC TCTACGGTTAGTATCTTCTTTAGAAAGGTCGGAGATAGTTAAATCTCATAAATTACGATCAATTCATTCAATATTTCCTT TTTTAGAGGACAAATTTCCACATTTAATTTATGTGTCAGATGTATTAATACCTTACCCCATCCATATAGAAAAATTAGTC CAAACCCTTCGCTATTGGATGAAAGATCCCTCTTCTTTGCATTTATTACGACTCTTTCTTCATGAATATTGGAATAGGAA CAGTCTTATTATTCAAAAGGGATCTATTTCTATTTTTACAAAAAGTAATCCAAGATTTTTCTTGTTCCTATATAATTCTC ATGTATATGAATACGAATCAATCCTCTTTTTTCTTCGTAACCAATCCTTTCATTTACGATCAACATTTTCTCGAGTCCTT CTTGAACGAATTTATTTCTATGGAAAAATAGAACATTTTGCAGAAGTCTTTGCTAATGATTTTCAGACTATCCTATGGTT GGTCAAGTATCCTTTCATGCATTATGTTAGATATCAAGGAAAATCCATTCTGGCTTCAAAAGATGGGCCTCTTCTGATGA AAAAATGGAAATATTACCTTGTCAATTTATGTCAATGTCATTTTTATGTGTGGTTTCAACCAGAAAAGATCTATATAAAT TCATTATCCAAGCATTCTCTCAACCTTTTGGGCTATCTTTCAAATGTAAAATTAAATCCTTCGGTCGTACGAAGTCAAAT GCTAGAAAATTCATTTCTAATAGATAAAGATAATACTATGAAGAAACTCGATACAATAGTTCCAATTATTCCTTTGATTG GATCATTGTCAAAAACGAAATTTTGTAAGGCAGTAGGACATCCCATTAGTAAACCGGTCCGGACTGATTCATCGGATTCT GATATTATCGACCGATTTGTGTGTATATGCAGAAATCTTTCTCATTATTATAGTGGATCTTCAATAAAAAAGAGTTTGTA TCGAGTAAAATATATACTTCGACTTTCTTGTGTTAAAACTTTGATTCGTAAACACAAAAGTACTGTACGCGCTTTTTTGA AAAGATTGGGTTCGGAATTATTAGAAGAATTTTTTACAGAAGAAGAACAAACTCTTTCTTTGATCTTCCCGAGAGTTTCC TCTATTTCGCGCAGGTTATATAGGGGGCGGGTTTGGTATTTGGATATTATTTCTATCAATGATTTGGCCAATCATGAATA ATTGGTTATGAAATCGAAATTTTCTCTAAATAACTAAAAAATAAATAATATAATGATAATGAGATATATAATATAATGAA ATATATAATAAGAAATATTATATAAAGAAATATTATATAATTAATAAGAAATATTATATATTTATTATATATTAAAAAAT ATAATGAAATAGAATGAAGGGATAACAAAAAATTCATTCAGTTCTATTATGAATATGAAATATGAAATGCTCATACAGTA TACGAGTAAGGATTGAGCAACTGAGTATTCAACTTCCTTATAGGTTTCGTCTAGGAAGGGAACTGGGTTTTAGATGTATA CATAGGGAAAGCCGTGTGCAATGAAAACGCAAGCACGGCTTGGAGAGGGATTTTTTACCTATTTTTTAACAAGGAAAATT TCTACTCTATCCGACTAGTTCCGGGTTCGAGTCCCGGGTAACCCAT
- Product
- tRNA-Lys
- Source
- RefSeq
- Link: