JCDB: Jatropha curcas Database

• Gene
• Transcript
• Protein

JCDBG00002

ID

JCDBG00002

Name

psbA

Type

protein_coding

Scaffold

NC_012224.1

Start

499

End

1560

Strand

-

Link

Genbank id:7564824 | Jatropha Genome Database ID:Jcr4S09358.10

Molecular function

GO:0009055 | electron carrier activity
GO:0045156 | electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Cellular component

Biological process

GO:0009772 | photosynthetic electron transport in photosystem II
GO:0019684 | photosynthesis, light reaction

KEGG

Entry: K02703
Name: psbA
Definition: photosystem II P680 reaction center D1 protein [EC:1.10.3.9]
ko00195:   Photosynthesis

Source

RefSeq

TF

Description

Sequence

CATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACC GTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATT GCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGG TGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTAT ACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTT AGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGAT CTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCC AGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCT ATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGG TCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACA ATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATG GCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATAT TATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTATTG AAGCTCCATCTACAAATGGATA

Gene structure

JCDB Genes gff download

JCDBG00002 's gene expression heatmap with it's positive (above) and negative (bellow) co-expressed neighbours

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Sample information

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JCDBG00002's gene network (protein-protein interaction & gene co-expression among this gene and its Top10 neighbors)   

Node color:
Pumpkin: this gene;
Macaroni And Cheese : co-expression gene;
Forest Green :protein-interacting gene ;
Edge color:
Pelorous: co-expression;
Turquoise Blue HueBlue : protein protein interaction;

co-expression network

node1	node2	type	scc
JCDBG00002	JCDBG00026	co-exp	0.926188
JCDBG00002	JCDBG00027	co-exp	0.921385
JCDBG00002	JCDBG00033	co-exp	0.899406
JCDBG00002	JCDBG00071	co-exp	0.893332
JCDBG00002	JCDBG00047	co-exp	0.867959
JCDBG00002	JCDBG21578	co-exp	0.862277
JCDBG00002	JCDBG00067	co-exp	0.859833
JCDBG00002	JCDBG00048	co-exp	0.845832
JCDBG00002	JCDBG13368	co-exp	0.841511
JCDBG00002	JCDBG06926	co-exp	0.835296
JCDBG00026	JCDBG00027	co-exp	0.967986
JCDBG00026	JCDBG00033	co-exp	0.950075
JCDBG00026	JCDBG00071	co-exp	0.934561
JCDBG00026	JCDBG00047	co-exp	0.916383
JCDBG00026	JCDBG21578	co-exp	0.810585
JCDBG00026	JCDBG00067	co-exp	0.902249
JCDBG00026	JCDBG00048	co-exp	0.835686
JCDBG00026	JCDBG13368	co-exp	0.794893
JCDBG00026	JCDBG06926	co-exp	0.73798
JCDBG00027	JCDBG00033	co-exp	0.935167
JCDBG00027	JCDBG00071	co-exp	0.925427
JCDBG00027	JCDBG00047	co-exp	0.913089
JCDBG00027	JCDBG21578	co-exp	0.839426
JCDBG00027	JCDBG00067	co-exp	0.928913
JCDBG00027	JCDBG00048	co-exp	0.818448
JCDBG00027	JCDBG13368	co-exp	0.818329
JCDBG00027	JCDBG06926	co-exp	0.790249
JCDBG00033	JCDBG00071	co-exp	0.899852
JCDBG00033	JCDBG00047	co-exp	0.885043
JCDBG00033	JCDBG21578	co-exp	0.808187
JCDBG00033	JCDBG00067	co-exp	0.87946
JCDBG00033	JCDBG00048	co-exp	0.814849
JCDBG00033	JCDBG13368	co-exp	0.807155
JCDBG00033	JCDBG06926	co-exp	0.777456
JCDBG00071	JCDBG00047	co-exp	0.937953
JCDBG00071	JCDBG21578	co-exp	0.745523
JCDBG00071	JCDBG00067	co-exp	0.921919
JCDBG00071	JCDBG00048	co-exp	0.8096
JCDBG00071	JCDBG13368	co-exp	0.753928
JCDBG00071	JCDBG06926	co-exp	0.708841
JCDBG00047	JCDBG21578	co-exp	0.742162
JCDBG00047	JCDBG00067	co-exp	0.923353
JCDBG00047	JCDBG00048	co-exp	0.772043
JCDBG00047	JCDBG13368	co-exp	0.727017
JCDBG00047	JCDBG06926	co-exp	0.672293
JCDBG21578	JCDBG00067	co-exp	0.745601
JCDBG21578	JCDBG00048	co-exp	0.7407
JCDBG21578	JCDBG13368	co-exp	0.879288
JCDBG21578	JCDBG06926	co-exp	0.823498
JCDBG00067	JCDBG00048	co-exp	0.722515
JCDBG00067	JCDBG13368	co-exp	0.782545
JCDBG00067	JCDBG06926	co-exp	0.758191
JCDBG00048	JCDBG13368	co-exp	0.711032
JCDBG00048	JCDBG06926	co-exp	0.696487
JCDBG13368	JCDBG06926	co-exp	0.88072

PPI network

node1	node2	type
JCDBG00002	JCDBG03287	PPI
JCDBG00002	JCDBG17367	PPI