Detail information of JCDBG00002
JCDBG00002
- ID
- JCDBG00002
- Name
- psbA
- Type
- protein_coding
- Scaffold
- NC_012224.1
- Start
- 499
- End
- 1560
- Strand
- -
- Link
- Genbank id:7564824 | Jatropha Genome Database ID:Jcr4S09358.10
- Molecular function
- GO:0009055 | electron carrier activity
GO:0045156 | electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity - Cellular component
- Biological process
- GO:0009772 | photosynthetic electron transport in photosystem II
GO:0019684 | photosynthesis, light reaction - KEGG
- Entry: K02703
Name: psbADefinition: photosystem II P680 reaction center D1 protein [EC:1.10.3.9]
ko00195: Photosynthesis - Source
- RefSeq
- TF
- Description
- Sequence
- CATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACC GTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATT GCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGG TGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTAT ACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTT AGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGAT CTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCC AGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCT ATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGG TCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACA ATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATG GCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATAT TATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTATTG AAGCTCCATCTACAAATGGATA
- Gene structure
-
JCDB Genes gff download
JCDBG00002 's gene expression heatmap with it's positive (above) and negative (bellow) co-expressed neighboursMouse click the small gray square will display sample information.
JCDBG00002's gene network (protein-protein interaction & gene co-expression among this gene and its Top10 neighbors)   
Node color:
Pumpkin: this gene;
Macaroni And Cheese : co-expression gene;
Forest Green :protein-interacting gene ;
Edge color:
Pelorous: co-expression;
Turquoise Blue HueBlue : protein protein interaction;co-expression network
node1 node2 type scc JCDBG00002 JCDBG00026 co-exp 0.926188 JCDBG00002 JCDBG00027 co-exp 0.921385 JCDBG00002 JCDBG00033 co-exp 0.899406 JCDBG00002 JCDBG00071 co-exp 0.893332 JCDBG00002 JCDBG00047 co-exp 0.867959 JCDBG00002 JCDBG21578 co-exp 0.862277 JCDBG00002 JCDBG00067 co-exp 0.859833 JCDBG00002 JCDBG00048 co-exp 0.845832 JCDBG00002 JCDBG13368 co-exp 0.841511 JCDBG00002 JCDBG06926 co-exp 0.835296 JCDBG00026 JCDBG00027 co-exp 0.967986 JCDBG00026 JCDBG00033 co-exp 0.950075 JCDBG00026 JCDBG00071 co-exp 0.934561 JCDBG00026 JCDBG00047 co-exp 0.916383 JCDBG00026 JCDBG21578 co-exp 0.810585 JCDBG00026 JCDBG00067 co-exp 0.902249 JCDBG00026 JCDBG00048 co-exp 0.835686 JCDBG00026 JCDBG13368 co-exp 0.794893 JCDBG00026 JCDBG06926 co-exp 0.73798 JCDBG00027 JCDBG00033 co-exp 0.935167 JCDBG00027 JCDBG00071 co-exp 0.925427 JCDBG00027 JCDBG00047 co-exp 0.913089 JCDBG00027 JCDBG21578 co-exp 0.839426 JCDBG00027 JCDBG00067 co-exp 0.928913 JCDBG00027 JCDBG00048 co-exp 0.818448 JCDBG00027 JCDBG13368 co-exp 0.818329 JCDBG00027 JCDBG06926 co-exp 0.790249 JCDBG00033 JCDBG00071 co-exp 0.899852 JCDBG00033 JCDBG00047 co-exp 0.885043 JCDBG00033 JCDBG21578 co-exp 0.808187 JCDBG00033 JCDBG00067 co-exp 0.87946 JCDBG00033 JCDBG00048 co-exp 0.814849 JCDBG00033 JCDBG13368 co-exp 0.807155 JCDBG00033 JCDBG06926 co-exp 0.777456 JCDBG00071 JCDBG00047 co-exp 0.937953 JCDBG00071 JCDBG21578 co-exp 0.745523 JCDBG00071 JCDBG00067 co-exp 0.921919 JCDBG00071 JCDBG00048 co-exp 0.8096 JCDBG00071 JCDBG13368 co-exp 0.753928 JCDBG00071 JCDBG06926 co-exp 0.708841 JCDBG00047 JCDBG21578 co-exp 0.742162 JCDBG00047 JCDBG00067 co-exp 0.923353 JCDBG00047 JCDBG00048 co-exp 0.772043 JCDBG00047 JCDBG13368 co-exp 0.727017 JCDBG00047 JCDBG06926 co-exp 0.672293 JCDBG21578 JCDBG00067 co-exp 0.745601 JCDBG21578 JCDBG00048 co-exp 0.7407 JCDBG21578 JCDBG13368 co-exp 0.879288 JCDBG21578 JCDBG06926 co-exp 0.823498 JCDBG00067 JCDBG00048 co-exp 0.722515 JCDBG00067 JCDBG13368 co-exp 0.782545 JCDBG00067 JCDBG06926 co-exp 0.758191 JCDBG00048 JCDBG13368 co-exp 0.711032 JCDBG00048 JCDBG06926 co-exp 0.696487 JCDBG13368 JCDBG06926 co-exp 0.88072 PPI network
node1 node2 type JCDBG00002 JCDBG03287 PPI JCDBG00002 JCDBG17367 PPI
JCDBR00002
- ID
- JCDBR00002
- Name
- psbA
- Type
- protein_coding
- Scaffold
- NC_012224.1
- Start
- 499
- End
- 1560
- Strand
- -
- Exon
- 499-1560
- Sequence
- CATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACC GTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATT GCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGG TGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTAT ACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTT AGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGAT CTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCC AGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCT ATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGG TCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACA ATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATG GCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATAT TATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTATTG AAGCTCCATCTACAAATGGATA
- Product
- Source
- RefSeq
- Link:
JCDBP00001
- ID
- JCDBP00001
- Parent
- JCDBR00002
- Name
- YP_002720093.1
- Scaffold
- NC_012224.1
- CDS
- 499-1560
- Strand:
- -
- Sequence
- MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISG AIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLI YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADI INRANLGMEVMHERNAHNFPLDLAAIEAPSTNG
- Product
- photosystem II protein D1
- Source
- RefSeq
- Link
- YP_002720093.1
- InterProScan
- IPR000484 Photosynthetic reaction centre, L/M
IPR005867 Photosystem II protein D1 - Pfam
- PF00124.15 Photo_RC Family